Endpoint Security Intune: A Complete Guide for Microsoft 365 Administrators

For professionals who already excel at deploying and managing devices in Microsoft 365, the next logical step is to lock down those devices with a robust Endpoint Security Intune strategy. This article walks you through the core components, integration points, and best‑practice steps you need to protect Windows, macOS, iOS, and Android endpoints using Microsoft Intune and Microsoft Defender for Endpoint.

Why Combine Intune with Endpoint Security?

Intune is Microsoft’s cloud‑based mobile device management (MDM) and mobile application management (MAM) solution. While it excels at provisioning, configuring, and updating devices, it does not, on its own, provide deep threat detection. That’s where Microsoft Defender for Endpoint (formerly Windows Defender ATP) comes in. By linking Defender’s advanced threat analytics with Intune’s compliance policies, you achieve:

Key Building Blocks of Endpoint Security Intune

When you design an endpoint security framework in Intune, focus on four pillars:

  1. Device Compliance Policies – Define settings such as password complexity, encryption, and OS version requirements.
  2. Endpoint Detection and Response (EDR) – Enable Defender for Endpoint on managed devices to collect telemetry and detect threats.
  3. Conditional Access Rules – Use Azure AD to enforce access based on compliance state and risk level.
  4. Security Baselines – Apply Microsoft’s recommended configuration sets for Windows 10/11, macOS, and mobile platforms.

Step‑by‑Step: Deploying Endpoint Security with Intune

The following workflow aligns with the typical 00:00‑Intro, 02:12‑Adam Gross intro, 03:35‑Steven Hosking intro, and 04:51‑Lavanya Lakshman intro structure you might see in a Microsoft training video.

1. Prepare Your Tenant

Make sure you have the required licenses (Microsoft 365 E5, A5, or the separate Defender for Endpoint license). Verify that Intune and Azure AD Premium are enabled, then navigate to the Microsoft Endpoint Manager admin center.

2. Onboard Devices to Defender for Endpoint

In the Endpoint security > Microsoft Defender for Endpoint blade, follow the guided onboarding wizard. Choose the automatic onboarding option for Windows 10/11 devices; for macOS, iOS, and Android, upload the appropriate configuration profiles.